PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN31262.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 454aa    MW: 50221.6 Da    PI: 6.5862
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN31262.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-11270312754
                 HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
         HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                 ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  KHN31262.1 270 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 312
                 79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.764263312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.27E-16266331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-9269312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-14269318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.44E-12270316No hitNo description
Gene3DG3DSA:4.10.280.108.6E-16270325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048733.24E-6383443No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0032440Molecular Function2-alkenal reductase [NAD(P)] activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MMSRINNSLV WMDEREAENT ASASWARNSK PNNNTTGFVE TSNDLGSLCA FKPMLDVDDE  60
WYNNITNHHH HQDIAFDPDN LLLHPSAVDS SSSCSPSHLQ FFLPPNPKLN PFDMGFLDPQ  120
ASSSLPLLAS ETTHFTPPQT STTTAFAGFQ SLQEGSSNPL FLNRSNILRP LESLPPSGAQ  180
PTLFQKRAAL RKNMNMSDNK KRKEKDEVVV EDVSFDGSGL NYDSDDLTES NYNDAKEKNG  240
GGGVSSNANS TVTGLDQKGK KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS  300
ILGDAIEYLK ELLQRINDLH NELESTPVGS SLTPVSSFHP LTPTPPTLPC RIKEELCPSS  360
LPSPNGQPAR VEVRLREGRA VNIHMFCGRK PGLLLSTMRA MDNLGLDIQQ AVISCFNGFA  420
MDIFRAEQCK EGQDVHPEQI KAVLLDSAGY NGMM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1259277KKKGMPAKNLMAERRRRKK
2271278ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ3932230.0FJ393223.1 Glycine max inducer of CBF expression 1 (ICE1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001238560.10.0inducer of CBF expression 1
SwissprotQ9LSE21e-135ICE1_ARATH; Transcription factor ICE1
TrEMBLA0A0B2RHL50.0A0A0B2RHL5_GLYSO; Transcription factor ICE1
STRINGGLYMA04G37750.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-122bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]